- d -
- D()
: LocARNA::AlignerImpl::UnmodifiedScoringView
, LocARNA::AlignerImpl::ModifiedScoringView
, LocARNA::AlignerN::UnmodifiedScoringViewN
, LocARNA::AlignerP
, LocARNA::AlignerN::UnmodifiedScoringViewN
, LocARNA::AlignerImpl
, LocARNA::AlignerN::ModifiedScoringViewN
, LocARNA::AlignerImpl::ModifiedScoringView
, LocARNA::AlignerImpl
, LocARNA::AlignerN
, LocARNA::AlignerN::UnmodifiedScoringViewN
, LocARNA::AlignerN
, LocARNA::AlignerP
- dangling()
: LocARNA::PFoldParams
- def()
: LocARNA::SparseMatrix< T >
- description()
: LocARNA::MultipleAlignment::SeqEntry
- deviation()
: LocARNA::MultipleAlignment
- diag_pos_bef()
: LocARNA::SparseTraceController
- DiscreteDistribution()
: LocARNA::DiscreteDistribution
- DO_TRACE()
: LocARNA::AlignerParams
- dot_bracket_structure()
: LocARNA::AlignmentImpl
- dot_bracket_structureA()
: LocARNA::Alignment
- dot_bracket_structureB()
: LocARNA::Alignment
- Dprime()
: LocARNA::AlignerP
- drop_worst_bpil()
: LocARNA::ExtRnaDataImpl
- drop_worst_bpil_precise()
: LocARNA::ExtRnaDataImpl
- drop_worst_bps()
: LocARNA::RnaDataImpl
, LocARNA::ExtRnaDataImpl
- drop_worst_uil()
: LocARNA::ExtRnaDataImpl