Class Hierarchy

This inheritance list is sorted roughly, but not completely, alphabetically:

• LocARNA::MultipleAlignment::AliColumn
• LocARNA::Aligner
• LocARNA::AlignerImpl
• LocARNA::AlignerN
• LocARNA::AlignerP
• LocARNA::AlignerParams
  • LocARNA::AlignerNParams
  • LocARNA::AlignerPParams
• LocARNA::AlignerRestriction
• LocARNA::Alignment
• LocARNA::AlignmentEdges
• LocARNA::AlignmentImpl
• LocARNA::Alphabet< T >
• LocARNA::AnchorConstraints
• LocARNA::MultipleAlignment::AnnoType
• LocARNA::ArcMatch
• LocARNA::ArcMatches
  • LocARNA::ArcMatchesIndexed
• LocARNA::BasePairs
• LocARNA::BasePairs__Arc
  • LocARNA::BasePairs::LeftAdjEntry
  • LocARNA::BasePairs::RightAdjEntry
• LocARNA::ConfusionMatrix
• LocARNA::DiscreteDistribution
• LocARNA::EdgeEnd
• LocARNA::SparseMatrix< T >::element
• LocARNA::SparseVector< T >::element
• LocARNA::EPM
• LocARNA::ExactMatcher
• LocARNA::ExtRnaDataImpl
• LocARNA::failure
  • LocARNA::syntax_error_failure
  • LocARNA::wrong_format_failure
• LocARNA::BasePairFilter::Filter
  • LocARNA::BasePairFilter::BPMinLoopSize
  • LocARNA::BasePairFilter::Canonical
  • LocARNA::BasePairFilter::Combined
  • LocARNA::BasePairFilter::SpanRange
• LocARNA::FitOnOff
• LocARNA::MultipleAlignment::FormatType
• LocARNA::FreeEndgapsDescription
• LocARNA::Gap
• LocARNA::greater_second< T >
• LocARNA::SparsificationMapper::info_for_pos
• LocARNA::RnaDataImpl::keyvec< KEY >
• LocARNA::LCSEPM
• LocARNA::ArcMatches::lex_greater_left_ends
• LocARNA::MatchController
  • LocARNA::TraceController
    • LocARNA::SparseTraceController
• LocARNA::MatchProbs
• LocARNA::Matrix< T >
• LocARNA::Matrix< elem_t >
  • LocARNA::OMatrix< elem_t >
  • LocARNA::RMatrix< elem_t >
  • LocARNA::RotMatrix< elem_t >
• LocARNA::McC_matrices_base
  • LocARNA::McC_ali_matrices_t
  • LocARNA::McC_matrices_t
• LocARNA::AlignerImpl::ModifiedScoringView
• LocARNA::AlignerN::ModifiedScoringViewN
• LocARNA::MultipleAlignment
  • LocARNA::Sequence
• LocARNA::option_def
• LocARNA::pair_of_size_t_hash
• LocARNA::PatternPair
• LocARNA::PatternPairMap
• LocARNA::PFoldParams
• LocARNA::plusvector< T >
• LocARNA::Ribofit
  • LocARNA::Ribofit_will2014
• LocARNA::Ribosum
  • LocARNA::RibosumFreq
• LocARNA::RnaData
  • LocARNA::ExtRnaData
• LocARNA::RnaDataImpl
• LocARNA::RnaEnsemble
• LocARNA::RnaEnsembleImpl
• LocARNA::RnaStructure
• LocARNA::Scoring
• LocARNA::ScoringParams
• LocARNA::MultipleAlignment::SeqEntry
• LocARNA::SequenceAnnotation
• LocARNA::SinglePattern
• LocARNA::SparseMatrix< T >
• LocARNA::SparseVector< T >
• LocARNA::SparsificationMapper
• LocARNA::StopWatch
• LocARNA::StralScore
• LocARNA::string1
• LocARNA::TaintedInftyInt
  • LocARNA::InftyInt
    • LocARNA::FiniteInt
• LocARNA::TraceRange
  • LocARNA::TraceController
• LocARNA::triple< T1, T2, T3 >
  • LocARNA::quadruple< T1, T2, T3, T4 >
    • LocARNA::quintuple< T1, T2, T3, T4, T5 >
• LocARNA::ArcMatches::tuple5
• LocARNA::type_wrapper< T >
• LocARNA::AlignerImpl::UnmodifiedScoringView
• LocARNA::AlignerN::UnmodifiedScoringViewN
• LocARNA::unordered_map< Key, T, Hash, Pred, Alloc >
• LocARNA::unordered_set< Key, Hash, Pred, Alloc >