Provides the standard view on the scoring. More...
#include <aligner_n.hh>
Public Member Functions | |
UnmodifiedScoringViewN (const AlignerN *alignerN) | |
const Scoring * | scoring () const |
infty_score_t | D (const Arc &a, const Arc &b) const |
infty_score_t | D (bool isA, const Arc &arcX, const Arc &arcY) |
infty_score_t | D (const ArcMatch &am) const |
Protected Attributes | |
const AlignerN * | alignerN_ |
aligner object for that the view is provided |
Provides the standard view on the scoring.
LocARNA::AlignerN::UnmodifiedScoringViewN::UnmodifiedScoringViewN | ( | const AlignerN * | alignerN | ) | [inline, explicit] |
Construct for AlignerN object
alignerN | The aligner object |
infty_score_t LocARNA::AlignerN::UnmodifiedScoringViewN::D | ( | const Arc & | a, |
const Arc & | b | ||
) | const [inline] |
View on matrix D
a | arc in A |
b | arc in B |
infty_score_t LocARNA::AlignerN::UnmodifiedScoringViewN::D | ( | bool | isA, |
const Arc & | arcX, | ||
const Arc & | arcY | ||
) | [inline] |
View on matrix D
arcX | arc in A/B determined by isA |
arcY | arc in B/A determined by isA |
isA | swap arcX/Y parameters |
infty_score_t LocARNA::AlignerN::UnmodifiedScoringViewN::D | ( | const ArcMatch & | am | ) | const [inline] |
View on matrix D
am | arc match |
const Scoring* LocARNA::AlignerN::UnmodifiedScoringViewN::scoring | ( | ) | const [inline] |
Get scoring object