List of all members.
Public Member Functions |
| Ribofit_will2014 () |
| Construct.
|
| ~Ribofit_will2014 () |
| destructor
|
Protected Member Functions |
double | basematch_score (char i, char j, double identity) const |
| ribofit base match score for specific identity
|
double | arcmatch_score (char i, char j, char k, char l, double identity) const |
| ribofit arc match score for specific identity
|
Member Function Documentation
ribofit arc match score for specific identity
- Parameters:
-
i | left character of first arc |
j | right character of first arc |
k | left character of second arc |
l | right character of second arc |
identity | sequence identity |
- Returns:
- ribofit arc match score
Implements LocARNA::Ribofit.
ribofit base match score for specific identity
- Parameters:
-
i | character in sequence A |
j | character in sequence B |
identity | sequence identity |
- Returns:
- ribofit base match score
Implements LocARNA::Ribofit.
The documentation for this class was generated from the following files: