LocARNA-1.9.2
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Public Member Functions | Protected Member Functions
LocARNA::Ribofit_will2014 Class Reference
Inheritance diagram for LocARNA::Ribofit_will2014:
LocARNA::Ribofit

List of all members.

Public Member Functions

 Ribofit_will2014 ()
 Construct.
 ~Ribofit_will2014 ()
 destructor

Protected Member Functions

double basematch_score (char i, char j, double identity) const
 ribofit base match score for specific identity
double arcmatch_score (char i, char j, char k, char l, double identity) const
 ribofit arc match score for specific identity

Member Function Documentation

double LocARNA::Ribofit_will2014::arcmatch_score ( char  i,
char  j,
char  k,
char  l,
double  identity 
) const [inline, protected, virtual]

ribofit arc match score for specific identity

Parameters:
ileft character of first arc
jright character of first arc
kleft character of second arc
lright character of second arc
identitysequence identity
Returns:
ribofit arc match score

Implements LocARNA::Ribofit.

double LocARNA::Ribofit_will2014::basematch_score ( char  i,
char  j,
double  identity 
) const [inline, protected, virtual]

ribofit base match score for specific identity

Parameters:
icharacter in sequence A
jcharacter in sequence B
identitysequence identity
Returns:
ribofit base match score

Implements LocARNA::Ribofit.


The documentation for this class was generated from the following files:
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