McCaskill matrices. More...
#include <mcc_matrices.hh>
Public Member Functions | |
McC_matrices_t (vrna_fold_compound_t *vc) | |
Construct from fold compound. | |
virtual | ~McC_matrices_t () |
destruct, optionally free local copy | |
char | ptype (size_t i, size_t j) const |
Access matrix ptype. | |
char | rev_ptype (size_t i, size_t j) const |
Reverse ptype. | |
short | S1 (size_t i) const |
Read access to sequence encoding S1. | |
char * | sequence () const |
McCaskill matrices.
Holds vrna fold compound with DP matrices
LocARNA::McC_matrices_t::McC_matrices_t | ( | vrna_fold_compound_t * | vc | ) | [explicit] |
Construct from fold compound.
vc | vrna fold compound (single) |
char LocARNA::McC_matrices_t::ptype | ( | size_t | i, |
size_t | j | ||
) | const [inline] |
Access matrix ptype.
i | first index |
j | second index |
char LocARNA::McC_matrices_t::rev_ptype | ( | size_t | i, |
size_t | j | ||
) | const [inline] |
Reverse ptype.
i | first index |
j | second index |
short LocARNA::McC_matrices_t::S1 | ( | size_t | i | ) | const [inline] |
Read access to sequence encoding S1.
i | index |