LocARNA-1.9.2
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Public Member Functions
LocARNA::McC_matrices_t Class Reference

McCaskill matrices. More...

#include <mcc_matrices.hh>

Inheritance diagram for LocARNA::McC_matrices_t:
LocARNA::McC_matrices_base

List of all members.

Public Member Functions

 McC_matrices_t (vrna_fold_compound_t *vc)
 Construct from fold compound.
virtual ~McC_matrices_t ()
 destruct, optionally free local copy
char ptype (size_t i, size_t j) const
 Access matrix ptype.
char rev_ptype (size_t i, size_t j) const
 Reverse ptype.
short S1 (size_t i) const
 Read access to sequence encoding S1.
char * sequence () const

Detailed Description

McCaskill matrices.

Holds vrna fold compound with DP matrices


Constructor & Destructor Documentation

LocARNA::McC_matrices_t::McC_matrices_t ( vrna_fold_compound_t *  vc) [explicit]

Construct from fold compound.

Parameters:
vcvrna fold compound (single)

Member Function Documentation

char LocARNA::McC_matrices_t::ptype ( size_t  i,
size_t  j 
) const [inline]

Access matrix ptype.

Parameters:
ifirst index
jsecond index
Returns:
matrix entry
char LocARNA::McC_matrices_t::rev_ptype ( size_t  i,
size_t  j 
) const [inline]

Reverse ptype.

Parameters:
ifirst index
jsecond index
Returns:
matrix entry
short LocARNA::McC_matrices_t::S1 ( size_t  i) const [inline]

Read access to sequence encoding S1.

Parameters:
iindex
Returns:
encoding of base i

The documentation for this class was generated from the following files:
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