parameters for AlignerP More...
#include <params.hh>
Public Member Functions | |
AlignerPParams & | min_am_prob (double min_am_prob) |
set parameter min_am_prob | |
AlignerPParams & | min_bm_prob (double min_bm_prob) |
set parameter min_bm_prob | |
AlignerPParams & | pf_scale (pf_score_t pf_scale) |
set parameter pf_scale | |
Protected Member Functions | |
AlignerPParams () | |
Protected Attributes | |
double | min_am_prob_ |
minimal probability of an arc match | |
double | min_bm_prob_ |
minimal probability of a base match | |
pf_score_t | pf_scale_ |
scaling factor for partition function | |
Friends | |
class | AlignerP |
parameters for AlignerP
LocARNA::AlignerPParams::AlignerPParams | ( | ) | [inline, protected] |
Construct with default parameters
AlignerPParams& LocARNA::AlignerPParams::min_am_prob | ( | double | min_am_prob | ) | [inline] |
set parameter min_am_prob
min_am_prob | minimal probability of an arc match |
AlignerPParams& LocARNA::AlignerPParams::min_bm_prob | ( | double | min_bm_prob | ) | [inline] |
set parameter min_bm_prob
min_bm_prob | minimal probability of a base match |
AlignerPParams& LocARNA::AlignerPParams::pf_scale | ( | pf_score_t | pf_scale | ) | [inline] |
set parameter pf_scale
pf_scale | scaling factor for partition function |