LocARNA-1.9.2
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LocARNA::AlignerPParams Class Reference

parameters for AlignerP More...

#include <params.hh>

Inheritance diagram for LocARNA::AlignerPParams:
LocARNA::AlignerParams

List of all members.

Public Member Functions

AlignerPParamsmin_am_prob (double min_am_prob)
 set parameter min_am_prob
AlignerPParamsmin_bm_prob (double min_bm_prob)
 set parameter min_bm_prob
AlignerPParamspf_scale (pf_score_t pf_scale)
 set parameter pf_scale

Protected Member Functions

 AlignerPParams ()

Protected Attributes

double min_am_prob_
 minimal probability of an arc match
double min_bm_prob_
 minimal probability of a base match
pf_score_t pf_scale_
 scaling factor for partition function

Friends

class AlignerP

Detailed Description

parameters for AlignerP


Constructor & Destructor Documentation

LocARNA::AlignerPParams::AlignerPParams ( ) [inline, protected]

Construct with default parameters


Member Function Documentation

AlignerPParams& LocARNA::AlignerPParams::min_am_prob ( double  min_am_prob) [inline]

set parameter min_am_prob

Parameters:
min_am_probminimal probability of an arc match
AlignerPParams& LocARNA::AlignerPParams::min_bm_prob ( double  min_bm_prob) [inline]

set parameter min_bm_prob

Parameters:
min_bm_probminimal probability of a base match
AlignerPParams& LocARNA::AlignerPParams::pf_scale ( pf_score_t  pf_scale) [inline]

set parameter pf_scale

Parameters:
pf_scalescaling factor for partition function

The documentation for this class was generated from the following file:
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