Description of free end gaps. More...
#include <params.hh>
Public Member Functions | |
FreeEndgapsDescription (const std::string &d) | |
Construct from string description. | |
bool | allow_left_1 () const |
bool | allow_right_1 () const |
bool | allow_left_2 () const |
bool | allow_right_2 () const |
Description of free end gaps.
Decodes the description given by a string of 4 characters '+'/'-' and provides methods with reasonable names.
LocARNA::FreeEndgapsDescription::FreeEndgapsDescription | ( | const std::string & | d | ) | [inline, explicit] |
Construct from string description.
d | description given by a string of 4 characters '+'/'-' |
bool LocARNA::FreeEndgapsDescription::allow_left_1 | ( | ) | const [inline] |
Are gaps free at left end of first sequences?
bool LocARNA::FreeEndgapsDescription::allow_left_2 | ( | ) | const [inline] |
Are gaps free at left end of second sequences?
bool LocARNA::FreeEndgapsDescription::allow_right_1 | ( | ) | const [inline] |
Are gaps free at right end of first sequences?
bool LocARNA::FreeEndgapsDescription::allow_right_2 | ( | ) | const [inline] |
Are gaps free at right end of second sequences?