LocARNA-1.9.2
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Public Member Functions
LocARNA::FreeEndgapsDescription Class Reference

Description of free end gaps. More...

#include <params.hh>

List of all members.

Public Member Functions

 FreeEndgapsDescription (const std::string &d)
 Construct from string description.
bool allow_left_1 () const
bool allow_right_1 () const
bool allow_left_2 () const
bool allow_right_2 () const

Detailed Description

Description of free end gaps.

Decodes the description given by a string of 4 characters '+'/'-' and provides methods with reasonable names.


Constructor & Destructor Documentation

LocARNA::FreeEndgapsDescription::FreeEndgapsDescription ( const std::string &  d) [inline, explicit]

Construct from string description.

Parameters:
ddescription given by a string of 4 characters '+'/'-'
Note:
the string description is suited to specify free end gaps in this way on the command line

Member Function Documentation

Are gaps free at left end of first sequences?

Returns:
whether free end gaps are allowed

Are gaps free at left end of second sequences?

Returns:
whether free end gaps are allowed

Are gaps free at right end of first sequences?

Returns:
whether free end gaps are allowed

Are gaps free at right end of second sequences?

Returns:
whether free end gaps are allowed

The documentation for this class was generated from the following file:
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