- s -
- score
: LocARNA::ArcMatches::tuple5
- scores
: LocARNA::ArcMatches
- scoring
: LocARNA::AlignerP
, LocARNA::AlignerN
- scoring_
: LocARNA::AlignerImpl
, LocARNA::AlignerParams
- self_
: LocARNA::ExtRnaDataImpl
, LocARNA::RnaDataImpl
, LocARNA::AlignmentImpl
- seq_pos
: LocARNA::SparsificationMapper::info_for_pos
- seqA
: LocARNA::AlignerN
, LocARNA::AlignerP
- seqA_
: LocARNA::AlignerImpl
, LocARNA::AlignmentImpl
, LocARNA::AlignerParams
- seqB
: LocARNA::AlignerN
, LocARNA::AlignerP
- seqB_
: LocARNA::AlignerImpl
, LocARNA::AlignmentImpl
, LocARNA::AlignerParams
- sequ_local_
: LocARNA::AlignerParams
- sequence_
: LocARNA::RnaDataImpl
, LocARNA::RnaEnsembleImpl
- shortname
: LocARNA::option_def
- size
: LocARNA::Gap
- sparsification_mapperA_
: LocARNA::AlignerNParams
- sparsification_mapperB_
: LocARNA::AlignerNParams
- stacking
: LocARNA::ScoringParams
- stacking_
: LocARNA::AlignerParams
- stacking_probs_available_
: LocARNA::RnaEnsembleImpl
- strA_
: LocARNA::AlignmentImpl
- strB_
: LocARNA::AlignmentImpl
- struct_local_
: LocARNA::AlignerParams
- struct_weight
: LocARNA::ScoringParams