LocARNA-1.9.2
LocARNA::SparsificationMapper Member List
This is the complete list of members for LocARNA::SparsificationMapper, including all inherited members.
Arc typedefLocARNA::SparsificationMapper
ArcIdx typedefLocARNA::SparsificationMapper
ArcIdxVec typedefLocARNA::SparsificationMapper
first_valid_mat_pos_before(index_t index, seq_pos_t pos, index_t left_end=std::numeric_limits< index_t >::max()) const LocARNA::SparsificationMapper [inline]
first_valid_mat_pos_before_eq(index_t index, seq_pos_t pos, index_t left_end=std::numeric_limits< index_t >::max()) const LocARNA::SparsificationMapper [inline]
get_max_info_vec_size() const LocARNA::SparsificationMapper [inline]
get_pos_in_seq_new(index_t idx, matidx_t pos) const LocARNA::SparsificationMapper [inline]
idx_after_leq(index_t index, seq_pos_t max_col, index_t left_end=std::numeric_limits< index_t >::max()) const LocARNA::SparsificationMapper [inline]
idx_geq(index_t index, seq_pos_t min_col, index_t left_end=std::numeric_limits< index_t >::max()) const LocARNA::SparsificationMapper [inline]
index_t typedefLocARNA::SparsificationMapper
InfoForPosVec typedefLocARNA::SparsificationMapper
is_valid_pos(const Arc &arc, seq_pos_t pos) const LocARNA::SparsificationMapper [inline]
is_valid_pos_external(seq_pos_t pos) const LocARNA::SparsificationMapper [inline]
matching_without_gap_possible(const Arc &arc, seq_pos_t pos) const LocARNA::SparsificationMapper [inline]
matidx_t typedefLocARNA::SparsificationMapper
number_of_valid_mat_pos(index_t idx) const LocARNA::SparsificationMapper [inline]
pos_unpaired(index_t idx, matidx_t pos) const LocARNA::SparsificationMapper [inline]
seq_pos_t typedefLocARNA::SparsificationMapper
SparsificationMapper(const BasePairs &bps_, const ExtRnaData &rnadata_, double prob_unpaired_in_loop_threshold_, double prob_basepair_in_loop_threshold_, bool index_left_ends)LocARNA::SparsificationMapper [inline]
valid_arcs_left_adj(const Arc &arc, seq_pos_t pos) const LocARNA::SparsificationMapper [inline]
valid_arcs_right_adj(index_t idx, matidx_t pos) const LocARNA::SparsificationMapper [inline]
valid_seq_positions(index_t idx) const LocARNA::SparsificationMapper [inline]
~SparsificationMapper()LocARNA::SparsificationMapper [inline, virtual]
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