LocARNA-1.9.2
LocARNA::RnaEnsembleImpl Member List
This is the complete list of members for LocARNA::RnaEnsembleImpl, including all inherited members.
arc_2_prob_ali(size_type i, size_type j) const LocARNA::RnaEnsembleImpl
arc_2_prob_noali(size_type i, size_type j) const LocARNA::RnaEnsembleImpl
arc_in_loop_prob_ali(size_type ip, size_type jp, size_type i, size_type j) const LocARNA::RnaEnsembleImpl
arc_in_loop_prob_noali(size_type ip, size_type jp, size_type i, size_type j) const LocARNA::RnaEnsembleImpl
compute_ensemble_probs(const PFoldParams &params, bool inLoopProbs, bool use_alifold)LocARNA::RnaEnsembleImpl
compute_McCaskill_alifold_matrices(const PFoldParams &params, bool inLoopProbs)LocARNA::RnaEnsembleImpl
compute_McCaskill_matrices(const PFoldParams &params, bool inLoopProbs)LocARNA::RnaEnsembleImpl
compute_Qm2()LocARNA::RnaEnsembleImpl
compute_Qm2_ali()LocARNA::RnaEnsembleImpl
expMLbase_LocARNA::RnaEnsembleImpl
in_loop_probs_available_LocARNA::RnaEnsembleImpl
McCmat_LocARNA::RnaEnsembleImpl
min_free_energy_LocARNA::RnaEnsembleImpl
min_free_energy_structure_LocARNA::RnaEnsembleImpl
pair_probs_available_LocARNA::RnaEnsembleImpl
ptype_of_admissible_basepair(size_type i, size_type j) const LocARNA::RnaEnsembleImpl
qm2_LocARNA::RnaEnsembleImpl
RnaEnsembleImpl(const MultipleAlignment &sequence, const PFoldParams &pfparams, bool inLoopProbs, bool use_alifold)LocARNA::RnaEnsembleImpl
sequence_LocARNA::RnaEnsembleImpl
stacking_probs_available_LocARNA::RnaEnsembleImpl
unpaired_in_loop_prob_ali(size_type k, size_type i, size_type j) const LocARNA::RnaEnsembleImpl
unpaired_in_loop_prob_noali(size_type k, size_type i, size_type j) const LocARNA::RnaEnsembleImpl
used_alifold_LocARNA::RnaEnsembleImpl
~RnaEnsembleImpl()LocARNA::RnaEnsembleImpl
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