This is the complete list of members for
LocARNA::RnaEnsemble, including all inherited members.
arc_2_prob(size_type i, size_type j) const | LocARNA::RnaEnsemble | |
arc_external_prob(size_type i, size_type j) const | LocARNA::RnaEnsemble | |
arc_in_loop_prob(size_type ip, size_type jp, size_type i, size_type j) const | LocARNA::RnaEnsemble | |
arc_prob(size_type i, size_type j) const | LocARNA::RnaEnsemble | |
arc_stack_prob(size_type i, size_type j) const | LocARNA::RnaEnsemble | |
has_base_pair_probs() const | LocARNA::RnaEnsemble | |
has_in_loop_probs() const | LocARNA::RnaEnsemble | |
has_stacking_probs() const | LocARNA::RnaEnsemble | |
length() const | LocARNA::RnaEnsemble | |
min_free_energy() const | LocARNA::RnaEnsemble | |
min_free_energy_structure() const | LocARNA::RnaEnsemble | |
multiple_alignment() const | LocARNA::RnaEnsemble | |
operator=(const RnaEnsemble &rna_ensemble) | LocARNA::RnaEnsemble | |
paired_downstream_prob(size_type i) const | LocARNA::RnaEnsemble | |
paired_upstream_prob(size_type i) const | LocARNA::RnaEnsemble | |
RnaEnsemble(const MultipleAlignment &ma, const PFoldParams ¶ms, bool inLoopProbs, bool use_alifold=true) | LocARNA::RnaEnsemble | |
RnaEnsemble(const RnaEnsemble &rna_ensemble) | LocARNA::RnaEnsemble | |
unpaired_external_prob(size_type k) const | LocARNA::RnaEnsemble | |
unpaired_in_loop_prob(size_type k, size_type i, size_type j) const | LocARNA::RnaEnsemble | |
unpaired_prob(size_type i) const | LocARNA::RnaEnsemble | |
~RnaEnsemble() | LocARNA::RnaEnsemble | [virtual] |