, including all inherited members.
a2s(size_t s, size_t i) const | LocARNA::McC_ali_matrices_t | [inline] |
bppm(size_t i, size_t j) const | LocARNA::McC_matrices_base | [inline] |
exp_params() const | LocARNA::McC_matrices_base | [inline] |
expMLbase(size_t i) const | LocARNA::McC_matrices_base | [inline] |
iidx(size_t i, size_t j) const | LocARNA::McC_matrices_base | [inline] |
jidx(size_t i, size_t j) const | LocARNA::McC_matrices_base | [inline] |
kT() const | LocARNA::McC_matrices_base | [inline] |
McC_ali_matrices_t(vrna_fold_compound_t *vc) | LocARNA::McC_ali_matrices_t | [explicit] |
McC_matrices_base(vrna_fold_compound_t *vc) | LocARNA::McC_matrices_base | [explicit, protected] |
pair(size_t c, size_t d) const | LocARNA::McC_matrices_base | [inline] |
pscore(size_t i, size_t j) const | LocARNA::McC_ali_matrices_t | [inline] |
q1k(size_t k) const | LocARNA::McC_matrices_base | [inline] |
qb(size_t i, size_t j) const | LocARNA::McC_matrices_base | [inline] |
qln(size_t l) const | LocARNA::McC_matrices_base | [inline] |
qm(size_t i, size_t j) const | LocARNA::McC_matrices_base | [inline] |
S(size_t s, size_t i) const | LocARNA::McC_ali_matrices_t | [inline] |
S3(size_t s, size_t i) const | LocARNA::McC_ali_matrices_t | [inline] |
S5(size_t s, size_t i) const | LocARNA::McC_ali_matrices_t | [inline] |
scale(size_t i) const | LocARNA::McC_matrices_base | [inline] |
Ss(size_t s) const (defined in LocARNA::McC_ali_matrices_t) | LocARNA::McC_ali_matrices_t | [inline] |
vc_ | LocARNA::McC_matrices_base | [protected] |
~McC_ali_matrices_t() | LocARNA::McC_ali_matrices_t | [virtual] |
~McC_matrices_base() | LocARNA::McC_matrices_base | [virtual] |