This is the complete list of members for
LocARNA::MatchProbs, including all inherited members.
get_lenA() const | LocARNA::MatchProbs | [inline] |
get_lenB() const | LocARNA::MatchProbs | [inline] |
MatchProbs() | LocARNA::MatchProbs | |
MatchProbs(const std::string &filename) | LocARNA::MatchProbs | [explicit] |
pairHMM_probs(const Sequence &seqA, const Sequence &seqB, const std::string &file) | LocARNA::MatchProbs | |
pf_probs(const RnaData &rnaA, const RnaData &rnaB, const Matrix< double > &sim_mat, const Alphabet< char > &alphabet, double gap_opening, double gap_extension, double pf_struct_weight, double temp, bool flag_local) | LocARNA::MatchProbs | |
prob(size_t i, size_t j) const | LocARNA::MatchProbs | [inline] |
read(std::istream &in) | LocARNA::MatchProbs | |
read(const std::string &filename) | LocARNA::MatchProbs | |
read_sparse(std::istream &in, size_type lenA, size_type lenB) | LocARNA::MatchProbs | |
read_sparse(const std::string &filename, size_type lenA, size_type lenB) | LocARNA::MatchProbs | |
size_type typedef | LocARNA::MatchProbs | |
write(std::ostream &out) const | LocARNA::MatchProbs | |
write(const std::string &filename) const | LocARNA::MatchProbs | |
write_sparse(std::ostream &out, double threshold) const | LocARNA::MatchProbs | |
write_sparse(const std::string &filename, double threshold) const | LocARNA::MatchProbs | |