LocARNA-1.9.2
LocARNA::MatchProbs Member List
This is the complete list of members for LocARNA::MatchProbs, including all inherited members.
get_lenA() const LocARNA::MatchProbs [inline]
get_lenB() const LocARNA::MatchProbs [inline]
MatchProbs()LocARNA::MatchProbs
MatchProbs(const std::string &filename)LocARNA::MatchProbs [explicit]
pairHMM_probs(const Sequence &seqA, const Sequence &seqB, const std::string &file)LocARNA::MatchProbs
pf_probs(const RnaData &rnaA, const RnaData &rnaB, const Matrix< double > &sim_mat, const Alphabet< char > &alphabet, double gap_opening, double gap_extension, double pf_struct_weight, double temp, bool flag_local)LocARNA::MatchProbs
prob(size_t i, size_t j) const LocARNA::MatchProbs [inline]
read(std::istream &in)LocARNA::MatchProbs
read(const std::string &filename)LocARNA::MatchProbs
read_sparse(std::istream &in, size_type lenA, size_type lenB)LocARNA::MatchProbs
read_sparse(const std::string &filename, size_type lenA, size_type lenB)LocARNA::MatchProbs
size_type typedefLocARNA::MatchProbs
write(std::ostream &out) const LocARNA::MatchProbs
write(const std::string &filename) const LocARNA::MatchProbs
write_sparse(std::ostream &out, double threshold) const LocARNA::MatchProbs
write_sparse(const std::string &filename, double threshold) const LocARNA::MatchProbs
 All Classes Files Functions Variables Typedefs Enumerations Enumerator Friends