LocARNA-1.9.2
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anchor_annotation() | LocARNA::LCSEPM | |
calculateLCSEPM(bool quiet) | LocARNA::LCSEPM | |
LCSEPM(const Sequence &seqA_, const Sequence &seqB_, const PatternPairMap &myPatterns, PatternPairMap &myLCSEPM) | LocARNA::LCSEPM | [inline] |
MapToPS(const std::string &sequenceA, const std::string &sequenceB, PatternPairMap &myMap, const std::string &file1, const std::string &file2) | LocARNA::LCSEPM | |
output_clustal(const std::string &outfile_name) | LocARNA::LCSEPM | |
output_locarna(const std::string &sequenceA, const std::string &sequenceB, const std::string &outfile) | LocARNA::LCSEPM | |
~LCSEPM() | LocARNA::LCSEPM | [virtual] |