LocARNA-1.9.2
LocARNA::EPM Member List
This is the complete list of members for LocARNA::EPM, including all inherited members.
add(seqpos_t posA, seqpos_t posB, char c)LocARNA::EPM [inline]
add_am(const Arc &a, const Arc &b)LocARNA::EPM [inline]
am_begin() const LocARNA::EPM [inline]
am_end() const LocARNA::EPM [inline]
Arc typedefLocARNA::EPM
ArcIdx typedefLocARNA::EPM
begin() const LocARNA::EPM [inline]
clear_am_to_do()LocARNA::EPM [inline]
el_pat_vec typedefLocARNA::EPM
end() const LocARNA::EPM [inline]
EPM()LocARNA::EPM [inline]
get_am(PairArcIdxVec::size_type idx) const LocARNA::EPM [inline]
get_cur_pos() const LocARNA::EPM [inline]
get_first_insertion() const LocARNA::EPM [inline]
get_max_tol_left() const LocARNA::EPM [inline]
get_score() const LocARNA::EPM [inline]
get_state() const LocARNA::EPM [inline]
includes(const EPM &epm_to_test) const LocARNA::EPM [inline]
includes_am(const EPM &epm_to_test) const LocARNA::EPM [inline]
insert_epm(const EPM &epm_to_insert)LocARNA::EPM [inline]
is_invalid() const LocARNA::EPM [inline]
last_matched_pos()LocARNA::EPM [inline]
matpos_t typedefLocARNA::EPM
next_arcmatch()LocARNA::EPM [inline]
number_of_am()LocARNA::EPM [inline]
overwrite(seqpos_t posA, seqpos_t posB, char c, pat_vec_t::size_type pos)LocARNA::EPM [inline]
pair_seqpos_t typedefLocARNA::EPM
PairArcIdx typedefLocARNA::EPM
PairArcIdxVec typedefLocARNA::EPM
pat_vec_at(pat_vec_t::size_type idx) const LocARNA::EPM [inline]
pat_vec_size() const LocARNA::EPM [inline]
pat_vec_t typedefLocARNA::EPM
print_epm(std::ostream &out, bool verbose) const LocARNA::EPM [inline]
seqpos_t typedefLocARNA::EPM
set_cur_pos(const matpos_t &cur_pos_)LocARNA::EPM [inline]
set_first_insertion(bool first_insertion_)LocARNA::EPM [inline]
set_invalid()LocARNA::EPM [inline]
set_max_tol_left(score_t tol)LocARNA::EPM [inline]
set_score(score_t score_)LocARNA::EPM [inline]
set_state(int state_)LocARNA::EPM [inline]
sort_am_to_do()LocARNA::EPM [inline]
sort_patVec()LocARNA::EPM [inline]
store_am(const Arc &a, const Arc &b)LocARNA::EPM [inline]
~EPM()LocARNA::EPM [inline, virtual]
 All Classes Files Functions Variables Typedefs Enumerations Enumerator Friends