This is the complete list of members for
LocARNA::Alignment, including all inherited members.
add_basepairA(int i, int j) | LocARNA::Alignment | |
add_basepairB(int i, int j) | LocARNA::Alignment | |
add_deleted_basepairA(int i, int j) | LocARNA::Alignment | |
add_deleted_basepairB(int i, int j) | LocARNA::Alignment | |
Alignment(const Sequence &seqA, const Sequence &seqB) | LocARNA::Alignment | |
Alignment(const Sequence &seqA, const Sequence &seqB, const edges_t &edges) | LocARNA::Alignment | |
Alignment(const Alignment &alignment) | LocARNA::Alignment | |
alignment_edges(bool only_local) const | LocARNA::Alignment | |
alistr_to_edge_ends(const std::string &alistr) | LocARNA::Alignment | [static] |
append(edge_end_t i, edge_end_t j) | LocARNA::Alignment | |
clear() | LocARNA::Alignment | |
dot_bracket_structureA(bool only_local) const | LocARNA::Alignment | |
dot_bracket_structureB(bool only_local) const | LocARNA::Alignment | |
edge_end_t typedef | LocARNA::Alignment | |
edge_ends_t typedef | LocARNA::Alignment | |
edges_t typedef | LocARNA::Alignment | |
local_endA() const | LocARNA::Alignment | |
local_endB() const | LocARNA::Alignment | |
local_startA() const | LocARNA::Alignment | |
local_startB() const | LocARNA::Alignment | |
operator=(const Alignment &alignment) | LocARNA::Alignment | |
seqA() const | LocARNA::Alignment | |
seqB() const | LocARNA::Alignment | |
set_consensus_structure(const RnaStructure &structure) | LocARNA::Alignment | |
set_structures(const RnaStructure &structureA, const RnaStructure &structureB) | LocARNA::Alignment | |
swap(Alignment &a1, Alignment &a2) | LocARNA::Alignment | |
~Alignment() | LocARNA::Alignment | |