LocARNA-1.9.2
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LocARNA
AlignerNParams
LocARNA::AlignerNParams Member List
This is the complete list of members for
LocARNA::AlignerNParams
, including all inherited members.
AlignerN
(defined in
LocARNA::AlignerNParams
)
LocARNA::AlignerNParams
[friend]
AlignerNParams
()
LocARNA::AlignerNParams
[inline, protected]
AlignerParams
()
LocARNA::AlignerParams
[inline, protected]
arc_matches
(const ArcMatches &arc_matches)
LocARNA::AlignerParams
[inline]
arc_matches_
LocARNA::AlignerParams
[protected]
constraints
(const AnchorConstraints &constraints)
LocARNA::AlignerParams
[inline]
constraints_
LocARNA::AlignerParams
[protected]
DO_TRACE
(bool DO_TRACE)
LocARNA::AlignerParams
[inline]
DO_TRACE_
LocARNA::AlignerParams
[protected]
free_endgaps
(const std::string &free_endgaps)
LocARNA::AlignerParams
[inline]
free_endgaps_
LocARNA::AlignerParams
[protected]
max_diff_am
(int max_diff_am)
LocARNA::AlignerParams
[inline]
max_diff_am_
LocARNA::AlignerParams
[protected]
max_diff_at_am
(int max_diff_at_am)
LocARNA::AlignerParams
[inline]
max_diff_at_am_
LocARNA::AlignerParams
[protected]
no_lonely_pairs
(bool no_lonely_pairs)
LocARNA::AlignerParams
[inline]
no_lonely_pairs_
LocARNA::AlignerParams
[protected]
scoring
(const Scoring &scoring)
LocARNA::AlignerParams
[inline]
scoring_
LocARNA::AlignerParams
[protected]
seqA
(const Sequence &seqA)
LocARNA::AlignerParams
[inline]
seqA_
LocARNA::AlignerParams
[protected]
seqB
(const Sequence &seqB)
LocARNA::AlignerParams
[inline]
seqB_
LocARNA::AlignerParams
[protected]
sequ_local
(bool sequ_local)
LocARNA::AlignerParams
[inline]
sequ_local_
LocARNA::AlignerParams
[protected]
sparsification_mapperA
(const SparsificationMapper &sparsification_mapperA)
LocARNA::AlignerNParams
[inline]
sparsification_mapperA_
LocARNA::AlignerNParams
[protected]
sparsification_mapperB
(const SparsificationMapper &sparsification_mapperB)
LocARNA::AlignerNParams
[inline]
sparsification_mapperB_
LocARNA::AlignerNParams
[protected]
stacking
(bool stacking)
LocARNA::AlignerParams
[inline]
stacking_
LocARNA::AlignerParams
[protected]
struct_local
(bool struct_local)
LocARNA::AlignerParams
[inline]
struct_local_
LocARNA::AlignerParams
[protected]
trace_controller
(const TraceController &trace_controller)
LocARNA::AlignerParams
[inline]
trace_controller_
LocARNA::AlignerParams
[protected]
~AlignerNParams
() (defined in
LocARNA::AlignerNParams
)
LocARNA::AlignerNParams
[inline]
~AlignerParams
() (defined in
LocARNA::AlignerParams
)
LocARNA::AlignerParams
[virtual]
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