Generated on Fri Mar 20 12:35:20 2009 for cpsp-2.3.1 by doxygen 1.5.5

cpsp::scth::SideChainDegOptions Class Reference

#include <side_chain_optdeg_option.h>


Detailed Description

Definition at line 25 of file side_chain_optdeg_option.h.


Public Member Functions

void setThreshold (int)
 SideChainDegOptions ()

Data Fields

double Cutoff
int Length
int maxSteps
std::string RandomizerPath
int Seed
SideChainOptions sideChainOptions
std::string startSeq
bool Stat
float TEMPERATURE
unsigned int tgtDeg
int Threshold
int timeLimit
bool verboseOut

Constructor & Destructor Documentation

cpsp::scth::SideChainDegOptions::SideChainDegOptions (  ) 

Definition at line 22 of file side_chain_optdeg_option.cpp.


Member Function Documentation

void cpsp::scth::SideChainDegOptions::setThreshold ( int  th  ) 

Set the accepted solutions one more than the threshold.

Definition at line 38 of file side_chain_optdeg_option.cpp.


Field Documentation

The cutoff value that is necessary for the MonteCarlo Algorithm.

break after such many steps

Definition at line 52 of file side_chain_optdeg_option.h.

The length of the sequence.

Definition at line 35 of file side_chain_optdeg_option.h.

break after this time limit

Definition at line 55 of file side_chain_optdeg_option.h.

The path directory of the HPrand binray in order to generate a random sequence.

Definition at line 68 of file side_chain_optdeg_option.h.

Seeds number.

Definition at line 32 of file side_chain_optdeg_option.h.

The first sequence to start with.

Definition at line 44 of file side_chain_optdeg_option.h.

Give statistics, default is true.

Definition at line 62 of file side_chain_optdeg_option.h.

temperature for metropolis local search

Definition at line 47 of file side_chain_optdeg_option.h.

Target degneracy.

Definition at line 59 of file side_chain_optdeg_option.h.

The threshold of suitable seeds.

Definition at line 38 of file side_chain_optdeg_option.h.

Verbose output, default is false.

Definition at line 65 of file side_chain_optdeg_option.h.


The documentation for this class was generated from the following files: