src/cpsp/SideChain/options/side_chain_optdeg_option.cpp

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00001 /*
00002  *  Main authors:
00003  *     Mohamad Rabbath <rabbath@informatik.uni-freiburg.de>
00004  *
00005  *  Contributing authors:
00006  *     Martin Mann <mmann@informatik.uni-freiburg.de>
00007  *     Sebastian Will <will@informatik.uni-freiburg.de>
00008  *
00009  *  This file is part of the CPSP-tools package:
00010  *     http://www.bioinf.uni-freiburg.de/sw/cpsp/
00011  *
00012  *  See the file "LICENSE" for information on usage and
00013  *  redistribution of this file, and for a
00014  *     DISCLAIMER OF ALL WARRANTIES.
00015  *
00016  */
00017 
00018 #include"side_chain_optdeg_option.h"
00019 namespace cpsp{
00020    //side chain threading
00021    namespace scth{
00022     SideChainDegOptions::SideChainDegOptions(){
00023        sideChainOptions.withOutput=false;
00024        Length=30;
00025        Threshold=10000;
00026        sideChainOptions.SolutionsNum=Threshold+1;
00027        startSeq="";
00028        Seed=-1;
00029        tgtDeg=100; //?
00030        timeLimit=-1;
00031        TEMPERATURE=0.4;
00032        Cutoff=0.01; //?
00033        maxSteps=100000;
00034        Stat=false;
00035        verboseOut=true;
00036        RandomizerPath="";
00037     }
00038     void SideChainDegOptions::setThreshold(int th){
00039        Threshold=th;
00040        sideChainOptions.SolutionsNum=Threshold+1;
00041     }
00042    }
00043 }