LocARNA::McC_matrices_t Class Reference

McCaskill matrices. More...

#include <mcc_matrices.hh>

Inheritance diagram for LocARNA::McC_matrices_t:

List of all members.

Public Member Functions
	McC_matrices_t (vrna_fold_compound_t *vc)
	Construct from fold compound.
virtual	~McC_matrices_t ()
	destruct, optionally free local copy
char	ptype (size_t i, size_t j) const
	Access matrix ptype.
char	rev_ptype (size_t i, size_t j) const
	Reverse ptype.
short	S1 (size_t i) const
	Read access to sequence encoding S1.
char *	sequence () const

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Detailed Description

McCaskill matrices.

Holds vrna fold compound with DP matrices

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Constructor & Destructor Documentation

LocARNA::McC_matrices_t::McC_matrices_t

(

vrna_fold_compound_t *

vc

)

[explicit]

Construct from fold compound.

Parameters:

vc	vrna fold compound (single)

---

Member Function Documentation

char LocARNA::McC_matrices_t::ptype	(	size_t	i,
		size_t	j
	)		const [inline]

Access matrix ptype.

Parameters:

i	first index
j	second index

Returns:

matrix entry

char LocARNA::McC_matrices_t::rev_ptype	(	size_t	i,
		size_t	j
	)		const [inline]

Reverse ptype.

Parameters:

i	first index
j	second index

Returns:

matrix entry

short LocARNA::McC_matrices_t::S1

(

size_t

i

)

const [inline]

Read access to sequence encoding S1.

Parameters:

i

index

Returns:

encoding of base i

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The documentation for this class was generated from the following files:

• src/LocARNA/mcc_matrices.hh
• src/LocARNA/mcc_matrices.cc