LocARNA::FreeEndgapsDescription Class Reference

Description of free end gaps. More...

#include <params.hh>

List of all members.

Public Member Functions
	FreeEndgapsDescription (const std::string &d)
	Construct from string description.
bool	allow_left_1 () const
bool	allow_right_1 () const
bool	allow_left_2 () const
bool	allow_right_2 () const

---

Detailed Description

Description of free end gaps.

Decodes the description given by a string of 4 characters '+'/'-' and provides methods with reasonable names.

---

Constructor & Destructor Documentation

LocARNA::FreeEndgapsDescription::FreeEndgapsDescription

(

const std::string &

d

)

[inline, explicit]

Construct from string description.

Parameters:

d	description given by a string of 4 characters '+'/'-'

Note:

the string description is suited to specify free end gaps in this way on the command line

---

Member Function Documentation

bool LocARNA::FreeEndgapsDescription::allow_left_1

(

)

const [inline]

Are gaps free at left end of first sequences?

Returns:

whether free end gaps are allowed

bool LocARNA::FreeEndgapsDescription::allow_left_2

(

)

const [inline]

Are gaps free at left end of second sequences?

Returns:

whether free end gaps are allowed

bool LocARNA::FreeEndgapsDescription::allow_right_1

(

)

const [inline]

Are gaps free at right end of first sequences?

Returns:

whether free end gaps are allowed

bool LocARNA::FreeEndgapsDescription::allow_right_2

(

)

const [inline]

Are gaps free at right end of second sequences?

Returns:

whether free end gaps are allowed

---

The documentation for this class was generated from the following file:

• src/LocARNA/params.hh