LocARNA::SparsificationMapper Member List

This is the complete list of members for LocARNA::SparsificationMapper, including all inherited members.

Arc typedef	LocARNA::SparsificationMapper
ArcIdx typedef	LocARNA::SparsificationMapper
ArcIdxVec typedef	LocARNA::SparsificationMapper
first_valid_mat_pos_before(index_t index, seq_pos_t pos, index_t left_end=std::numeric_limits< index_t >::max()) const	LocARNA::SparsificationMapper	[inline]
first_valid_mat_pos_before_eq(index_t index, seq_pos_t pos, index_t left_end=std::numeric_limits< index_t >::max()) const	LocARNA::SparsificationMapper	[inline]
get_max_info_vec_size() const	LocARNA::SparsificationMapper	[inline]
get_pos_in_seq_new(index_t idx, matidx_t pos) const	LocARNA::SparsificationMapper	[inline]
idx_after_leq(index_t index, seq_pos_t max_col, index_t left_end=std::numeric_limits< index_t >::max()) const	LocARNA::SparsificationMapper	[inline]
idx_geq(index_t index, seq_pos_t min_col, index_t left_end=std::numeric_limits< index_t >::max()) const	LocARNA::SparsificationMapper	[inline]
index_t typedef	LocARNA::SparsificationMapper
InfoForPosVec typedef	LocARNA::SparsificationMapper
is_valid_pos(const Arc &arc, seq_pos_t pos) const	LocARNA::SparsificationMapper	[inline]
is_valid_pos_external(seq_pos_t pos) const	LocARNA::SparsificationMapper	[inline]
matching_without_gap_possible(const Arc &arc, seq_pos_t pos) const	LocARNA::SparsificationMapper	[inline]
matidx_t typedef	LocARNA::SparsificationMapper
number_of_valid_mat_pos(index_t idx) const	LocARNA::SparsificationMapper	[inline]
pos_unpaired(index_t idx, matidx_t pos) const	LocARNA::SparsificationMapper	[inline]
seq_pos_t typedef	LocARNA::SparsificationMapper
SparsificationMapper(const BasePairs &bps_, const ExtRnaData &rnadata_, double prob_unpaired_in_loop_threshold_, double prob_basepair_in_loop_threshold_, bool index_left_ends)	LocARNA::SparsificationMapper	[inline]
valid_arcs_left_adj(const Arc &arc, seq_pos_t pos) const	LocARNA::SparsificationMapper	[inline]
valid_arcs_right_adj(index_t idx, matidx_t pos) const	LocARNA::SparsificationMapper	[inline]
valid_seq_positions(index_t idx) const	LocARNA::SparsificationMapper	[inline]
~SparsificationMapper()	LocARNA::SparsificationMapper	[inline, virtual]