LocARNA::MatchProbs Member List

This is the complete list of members for LocARNA::MatchProbs, including all inherited members.

get_lenA() const	LocARNA::MatchProbs	[inline]
get_lenB() const	LocARNA::MatchProbs	[inline]
MatchProbs()	LocARNA::MatchProbs
MatchProbs(const std::string &filename)	LocARNA::MatchProbs	[explicit]
pairHMM_probs(const Sequence &seqA, const Sequence &seqB, const std::string &file)	LocARNA::MatchProbs
pf_probs(const RnaData &rnaA, const RnaData &rnaB, const Matrix< double > &sim_mat, const Alphabet< char > &alphabet, double gap_opening, double gap_extension, double pf_struct_weight, double temp, bool flag_local)	LocARNA::MatchProbs
prob(size_t i, size_t j) const	LocARNA::MatchProbs	[inline]
read(std::istream &in)	LocARNA::MatchProbs
read(const std::string &filename)	LocARNA::MatchProbs
read_sparse(std::istream &in, size_type lenA, size_type lenB)	LocARNA::MatchProbs
read_sparse(const std::string &filename, size_type lenA, size_type lenB)	LocARNA::MatchProbs
size_type typedef	LocARNA::MatchProbs
write(std::ostream &out) const	LocARNA::MatchProbs
write(const std::string &filename) const	LocARNA::MatchProbs
write_sparse(std::ostream &out, double threshold) const	LocARNA::MatchProbs
write_sparse(const std::string &filename, double threshold) const	LocARNA::MatchProbs