@article{wolff2020galaxy,
author = {Wolff, Joachim and Rabbani, Leily and Gilsbach, Ralf and Richard, Gautier and Manke, Thomas and Backofen, Rolf and Grüning, Björn A},
title = {{Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization}},
journal = {Nucleic Acids Research},
year = {2020},
doi = {10.1093/nar/gkaa220},
volume = {48},
user = {miladim},
pages = {W177-W184},
number = {W1},
month = {04},
issn = {0305-1048},
eprint = {https://academic.oup.com/nar/article-pdf/48/W1/W177/33433206/gkaa220.pdf},
abstract = {{The Galaxy HiCExplorer provides a web service at https://hicexplorer.usegalaxy.eu. It enables the integrative analysis of chromosome conformation by providing tools and computational resources to pre-process, analyse and visualize Hi-C, Capture Hi-C (cHi-C) and single-cell Hi-C (scHi-C) data. Since the last publication, Galaxy HiCExplorer has been expanded considerably with new tools to facilitate the analysis of cHi-C and to provide an in-depth analysis of Hi-C data. Moreover, it supports the analysis of scHi-C data by offering a broad range of tools. With the help of the standard graphical user interface of Galaxy, presented workflows, extensive documentation and tutorials, novices as well as Hi-C experts are supported in their Hi-C data analysis with Galaxy HiCExplorer.}}
}