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src/biu/LatticeProtein_I.hh

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#ifndef LATTICEPROTEIN_I_HH_
#define LATTICEPROTEIN_I_HH_

#include "LatticeProtein.hh"

namespace biu
{
    class LatticeProtein_I : public biu::LatticeProtein
    {

    protected:
        LatticeModel const *    lattice;        
        
        ContactEnergyFunction const *   energyFunc; 
        
        Sequence const *                sequence;   
        
        bool                    seqShared;  
    
    public:
    
        LatticeProtein_I(const LatticeModel* lattice, 
                        const ContactEnergyFunction* energyFunc, 
                        const Sequence* seq,
                        const bool seqShared);

        LatticeProtein_I(const LatticeProtein_I& toCopy);

        virtual LatticeProtein_I* clone() = 0;
        virtual LatticeProtein_I* fromString(const std::string& stringRep) const = 0;
                        

        virtual ~LatticeProtein_I();
        
        // additional functions
        
        virtual const IPointVec* const getPointsRef() const = 0;
        
        virtual IPointVec* getPointsRef() = 0;
        
        virtual void setMoveStrAbs(const std::string& moveString) = 0;
        
    // abstract function implementation (LatticeProtein)

        virtual const LatticeModel* getLatticeModel() const;
        
        virtual const ContactEnergyFunction* getContactEnergyFunction() const;

        virtual bool isSequenceShared() const;

        virtual const Sequence* getSequenceRef() const;

    // abstract function implementation (BioMolecule)
        
        Sequence    getSequence() const;

        size_t      getLength() const;
        
        virtual LatticeProtein_I&   operator= (const LatticeProtein_I& latProt2);       
            
    };

}

#endif /*LATTICEPROTEIN_I_HH_*/