src/biu/LatticeProtein.hh

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00001 #ifndef LATTICEPROTEIN_H_
00002 #define LATTICEPROTEIN_H_
00003 
00004 
00005 #include "BackboneStructure3D.hh"
00006 #include "BioMolecule.hh"
00007 #include "LatticeModel.hh"
00008 #include "ContactEnergyFunction.hh"
00009 
00010 namespace biu
00011 {
00026     class LatticeProtein : public BioMolecule, public BackboneStructure3D
00027     {
00028     public:
00030         LatticeProtein() 
00031         {}
00032                         
00034         virtual ~LatticeProtein() 
00035         {} 
00036         
00037     // additional abstract functions in LatticeProtein
00038     
00039         virtual bool            operator== (const LatticeProtein& latProt2) const = 0;
00040         virtual bool            operator!= (const LatticeProtein& latProt2) const = 0;
00041 
00042     
00045         virtual std::string getMoveStrAbs() const = 0;
00046         
00049         virtual std::string getMoveStrRel() const = 0;
00050         
00053         virtual MoveSequence getMoveSeqAbs() const = 0;
00054         
00057         virtual MoveSequence getMoveSeqRel() const = 0;
00058         
00061         virtual IPointVec getPoints() const = 0;
00062 
00064         virtual bool    isSelfAvoiding() const = 0;
00065         
00068         virtual bool    isConnected() const = 0;
00069         
00071         virtual const LatticeModel* getLatticeModel() const = 0;
00072         
00074         virtual const ContactEnergyFunction* getContactEnergyFunction() const = 0;
00075         
00078         virtual bool isSequenceShared() const = 0;
00079         
00084         virtual const Sequence* getSequenceRef() const = 0;
00085 
00086     };
00087 
00088 } // namespace biu
00089 
00090 #endif /*LATTICEPROTEIN_H_*/