src/cpsp/SideChain/options/chain_option.h

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00001 /*
00002  *  Main authors:
00003  *     Mohamad Rabbath <rabbath@informatik.uni-freiburg.de>
00004  *
00005  *  Contributing authors:
00006  *     Martin Mann <mmann@informatik.uni-freiburg.de>
00007  *     Sebastian Will <will@informatik.uni-freiburg.de>
00008  *
00009  *  This file is part of the CPSP-tools package:
00010  *     http://www.bioinf.uni-freiburg.de/sw/cpsp/
00011  *
00012  *  See the file "LICENSE" for information on usage and
00013  *  redistribution of this file, and for a
00014  *     DISCLAIMER OF ALL WARRANTIES.
00015  *
00016  */
00017 
00018 #ifndef CHAIN_THREADING_OPTIONS
00019 #define CHAIN_THREADING_OPTIONS
00020 #include<iostream>
00021 
00022 #include <cpsp/HCoreDatabase.hh>
00023 
00024 namespace cpsp{
00025    //side chain threading
00026    namespace scth{
00027     enum OPTION_OUTPUT { NORMAL,MOVES,TEST};
00028     class SideChainOptions{
00029        public:
00035         int Output;
00036 
00040         bool Draw;
00041         
00045         bool BreakSym;
00046         
00048         bool withOutput;
00049 
00051         bool verbose;
00052 
00054         int SolutionsNum;
00055         
00057         cpsp::HCoreDatabase * coreDB;
00058 //      ///The root of the Cores database
00059 //      std::string* DBRoot;
00060     
00062         std::string* Sequence;
00063 
00065         std::string* Description;
00066 
00068         std::string* JmlHome;
00069 
00071         std::string* ViewerHome;
00072 
00074         SideChainOptions();
00075         SideChainOptions(const SideChainOptions &rhs);
00076 //      //This constructor is so ugly so do not use it :)
00077 //      SideChainOptions(int,bool,bool,const std::string& ,const std::string& ,const std::string& ,int,const std::string&  ,const std::string& );
00078 
00080         ~SideChainOptions();
00081     };
00082    }
00083 }
00084 #endif