src/cpsp/SideChain/options/chain_option.cpp

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00001 /*
00002  *  Main authors:
00003  *     Mohamad Rabbath <rabbath@informatik.uni-freiburg.de>
00004  *
00005  *  Contributing authors:
00006  *     Martin Mann <mmann@informatik.uni-freiburg.de>
00007  *     Sebastian Will <will@informatik.uni-freiburg.de>
00008  *
00009  *  This file is part of the CPSP-tools package:
00010  *     http://www.bioinf.uni-freiburg.de/sw/cpsp/
00011  *
00012  *  See the file "LICENSE" for information on usage and
00013  *  redistribution of this file, and for a
00014  *     DISCLAIMER OF ALL WARRANTIES.
00015  *
00016  */
00017 
00018 #include"chain_option.h"
00019 namespace cpsp{
00020    //side chain threading
00021    namespace scth{
00022     SideChainOptions::SideChainOptions()
00023      :  Output(NORMAL)
00024         , Draw(false)
00025         , BreakSym(true)
00026         , withOutput(true)
00027         , verbose(false)
00028         , SolutionsNum(1)
00029         , coreDB(NULL)
00030         , Sequence(NULL)
00031         , Description(NULL)
00032         , JmlHome(NULL)
00033         , ViewerHome(NULL)
00034     {
00035        //reading the JmlHome from the environment variables
00036         char * jPath;
00037        jPath=getenv ("JMOL_HOME");
00038        if(jPath!=NULL){
00039         JmlHome=new std::string(jPath);
00040        }
00041     }
00042 
00043 
00044     SideChainOptions::SideChainOptions(const SideChainOptions &rhs)
00045      :  Output(rhs.Output)
00046         , Draw(rhs.Draw)
00047         , BreakSym(rhs.BreakSym)
00048         , withOutput(rhs.withOutput)
00049         , verbose(rhs.verbose)
00050         , SolutionsNum(rhs.SolutionsNum)
00051         , coreDB(rhs.coreDB)
00052         , Sequence(NULL)
00053         , Description(NULL)
00054         , JmlHome(NULL)
00055         , ViewerHome(NULL)
00056     {
00057 
00058        if(rhs.Sequence!=NULL)
00059         this->Sequence=new std::string(*(rhs.Sequence));
00060        if(rhs.Description!=NULL)
00061         this->Description=new std::string(*(rhs.Description));
00062        if(rhs.JmlHome!=NULL)
00063         this->Description=new std::string(*(rhs.JmlHome));
00064        if(rhs.ViewerHome!=NULL)
00065         this->Description=new std::string(*(rhs.ViewerHome));
00066     }
00067     
00068     SideChainOptions::~SideChainOptions(){
00069        if (Description != NULL) delete(Description);
00070        Description=NULL;
00071        if (Sequence != NULL) delete(Sequence);
00072        Sequence=NULL;
00073        if (JmlHome != NULL) delete(JmlHome);
00074        JmlHome=NULL;
00075        if (ViewerHome != NULL) delete(ViewerHome);
00076        ViewerHome=NULL;
00077     }
00078     
00079    }
00080 }