Proseminar : Introduction to Bioinformatics
Lecturer
Rolf Backofen, Florian Eggenhofer, Pavan Videm
Dates
- Inital meeting: 06.11 at 14:00 via Zoom (see here for installation)
https://uni-freiburg.zoom.us/j/89057005343
Meeting ID: 890 5700 5343
Passcode: *fg2BsvKr
- Seminar Part I on Biological Introduction to RNA-related topics: on 17.12, from 10:00 to 16:00 via Zoom
https://uni-freiburg.zoom.us/j/84142568861
Meeting ID: 841 4256 8861
Passcode: yKU4.P@bV
- Seminar Part II on RNA-related book chapter: on 10.02.2021 from 13:00 to 16:00 via Zoom
https://uni-freiburg.zoom.us/j/63023646664
Meeting ID: 630 2364 6664
Passcode: xCbzu70Je
- Seminar Part II on RNA-related book chapter: on 11.02.2021 from 13:00 to 16:00 via Zoom
https://uni-freiburg.zoom.us/j/62854015970
Meeting ID: 628 5401 5970
Passcode: 1K5Vv4Y8C
Organisation
Chapters
- Chapter 1: Free Energy Minimization to Predict RNA Secondary Structures and Computational RNA Design
Given to: Heinzinger, Julius handout
- Chapter 2: RNA Secondary Structure Prediction from Multi-aligned Sequences
Given to: Schell, Daniel Michael handout
- Chapter 3: A Simple Protocol for the Inference of RNA Global Pairwise Alignments
Given to: Zoabi, Rand handout
- Chapter 8: Quality Control of RNA-Seq Experiments
Given to: Jessl, Florian Alexander handout
- Chapter 9: Accurate Mapping of RNA-Seq Data
Given to: Bouz El-Jedi, Tamer handout
- Chapter 11: Transcriptome Assembly and Alternative Splicing Analysis
Given to: Albert, Hans handout
- Chapter 13: Prediction of miRNA Targets
Given to: Rassler, Daniela handout
- Chapter 19: The ViennaRNA Web Services
Given to: Marchat, Victor handout
- Chapter 22: Rfam: Annotating Families of Non-Coding RNA Sequences
Given to: Hernandez Abreu, Javier handout
- Chapter 23: ASPicDB: A Database Web Tool for Alternative Splicing Analysis
Given to: Lipski, Aljoscha handout
- Chapter 25: Computational Design of Artificial RNA Molecules for Gene Regulation
Given to: Heisner, Tillmann handout
- All papers are taken from the RNA Bioinformatics book.
RNA Bioinformatics
File:RNA Bioinformatics