Bioinformatics - Journal Club
Dates and locations of the joint Bioinformatics Journal Club of Uni Freiburg and
MPI of Immunobiology and Epigenetics in 2013/14.
Date
- Thursday biweekly at 10:00 between September 2013 and July 2014
Locations
- Building 051, Room 00-031, Uni Freiburg, Faculty of
Engineering, Georges-Köhler-Allee 106
- Jenuwein Seminar Room (2nd floor) ,
MPI IE, Stübeweg 51
Previous Journal Clubs
Journal Club
| Date |
Location |
Time |
Speaker |
Paper |
| 26.09. |
Uni |
10:00 |
Martin Mann |
Reisen et
al. Reaction-MQL: line notation for functional transformation. J Chem
Inf Model, 2009
|
| 07.11. |
Uni |
10:00 |
Friederike Dündar |
Cancelled. |
| 21.11. |
Uni |
10:00 |
Patrick Wright |
Quorum sensing in bacteria |
| 05.12. |
MPI |
10:00 |
Sarah Diehl |
HLA typing
from RNA-Seq sequence reads. Boegel et al. Genome Med, 2012 |
| 09.01. |
Uni |
10:00 |
Steffen Heyne |
A quality
control system for profiles obtained by ChIP sequencing. Mendoza-Parra
et al. NAR, 2013 |
| 23.01. |
Uni |
10:00 |
Milad Miladi |
Performance comparison of structure prediction tools for aligned
RNA sequences:
(1)
(2)
(3) |
| 06.02. |
MPI |
10:00 |
Thomas Manke |
Predicting
the molecular complexity of sequencing libraries. Daley & Smith. Nat
Meth, 2013 |
| 20.02. |
Uni |
10:00 |
Robert Kleinkauf |
The emerging
role of triple helices in RNA biology. Conrad. WRNA, 2014 |
| 06.03. |
Uni |
10:00 |
Björn Grüning |
TBA |
| 20.03. |
MPI |
10:00 |
Fidel Ramirez |
Chromosome-
scale scaffolding of de novo genome assemblies based on chromatin
interactions. Burton et al. Nat Biotech, 2013 |
| 03.04. |
Uni |
10:00 |
Friederike Dündar |
Master
transcription factors and mediator establish super-enhancers at key
cell identity genes. Whyte et al. Cell, 2013 |
| 24.04. |
Uni |
10:00 |
Daniel Maticzka |
Molecular
biology: A second layer of information in RNA. Ramos & Laederach.
Nature, 2014 |
| 08.05. |
MPI |
10:00 |
Fabian Kilpert |
A comparison
of methods for differential expression analysis of RNA-seq data.
Soneson & Delorenzi. BMC Bioinformatics, 2013 |
| 22.05. |
MPI |
10:00 |
Pavan Videm |
Sailfish enables
alignment-free isoform quantification from RNA-seq reads using lightweight
algorithms. Patro et al. Nat Biotech, 2014 |
| 05.06. |
Uni |
10:00 |
Andreas Richter |
Enriched
domain detector: a program for detection of wide genomic enrichment
domains robust against local variations. Lund et al. NAR, 2014 |
| 26.06. |
MPI |
10:00 |
Barbara Hummel |
Single-cell
RNA-seq reveals dynamic, random monoallelic gene expression in
mammalian cells. Deng et al. Science, 2014 |
| 03.07. |
Uni |
10:00 |
Omer Alkhnbashi |
Orthogonal
Cas9 proteins for RNA-guided gene regulation and editing. Esvelt et al.
Nat Methods, 2013 |
| 17.07. |
Uni |
10:00 |
Christina Otto |
Chain-RNA: a
comparative ncRNA search tool based on the two-dimensional chain
algorithm. Lei et al. IEEE/ACM Trans Comput Biol Bioinform, 2013
|
| 31.07. |
MPI |
10:00 |
Kousik Kundu |
Toward
better understanding of artifacts in variant calling from high-coverage
samples. Li. Bioinformatics, 2014 |
